version: "1.0.1"
name: phylogeny-workflow description: Follow the bundled phylogeny workflow. Use this skill only when the user explicitly invokes $phylogeny-workflow. Do not auto-select this skill for general phylogeny, tree plotting, or signal-analysis tasks.
Phylogeny Workflow
Overview
Use references/source-note.md as the source of truth for this skill.
Only use this skill when the user explicitly names $phylogeny-workflow.
Do not use this skill based on topic similarity alone.
Workflow
- Read references/source-note.md first.
- Follow the note's tree-analysis workflow, output requirements, and styling expectations closely.
- Replace stale input files, output folders, and intermediate processing steps with current project equivalents instead of copying blindly.
- Preserve the original requirement that traceable data processing and figure generation should land in runnable R outputs.
- If the note conflicts with the current user request, follow the current request and explain the adjustment.
Source
- Bundled original note:
references/source-note.md - Installed skill name:
$phylogeny-workflow